Fungal Diseases 5 min read

True Fungus

By Editorial Team · ·Reviewed by Dr. Elena Rossi

An opportunistic oomycete infection producing fluffy cotton-wool growths on dead or damaged fish tissue.

Close-up of goldfish with Saprolegnia oomycete tufts on damaged fin tissue

Quick Answer

Saprolegnia, commonly called true fungus or water mold, is an opportunistic oomycete (Stramenopiles) that colonizes dead or damaged tissue on fish, producing fluffy white or grey cotton-wool growths. This is a medium-severity condition because the oomycete itself rarely kills healthy fish, but it signals underlying tissue damage, bacterial infection, or poor water quality that can become lethal if untreated. Treat with methylene blue at 3 mg per liter as a 30-minute bath or 1 mg per liter for prolonged pond treatment, or use acriflavine-based products such as API Fungus Cure according to label instructions for 7–10 days. Every day of delay allows the oomycete hyphae to penetrate deeper into compromised tissue, and secondary bacterial infections such as Aeromonas or Pseudomonas often colonize the same wounds simultaneously.

Knowledge Journey

Move from reading to action with related calculators, fish profiles, and quiz-based recommendations.

Treatment Options Compared

MethodEffectivenessCostTime to ResolveFish/Pond Stress Level
Methylene blue bath (3 mg/L, 30 min)High – directly kills oomycete hyphae on contactLow ($8–15)3–7 days (repeat baths every 48 hours)Low–Moderate – brief handling stress
Acriflavine (API Fungus Cure) tank treatmentModerate–High – suppresses oomycete and bacterial biofilmsLow ($8–12)7–10 daysLow – gentle on fish, safe for biofilter
Malachite green (alone)High – potent antifungal but toxic to invertebratesLow ($5–10)5–7 daysModerate – stains silicone, toxic to shrimp and snails
Hydrogen peroxide dip (3%, 1–2 mL/L, 5 min)Moderate – oxidizes oomycete tissue directlyVery Low ($2–3)Immediate for visible tuftsHigh – risky if concentration or timing is off
Salt (1–3 ppt) + pristine waterLow – inhibits oomycete growth marginallyVery Low ($3–5)1–2 weeks (often insufficient alone)Very Low – supportive only
Troubleshooting Guide
1 Fungal tufts cleared with methylene blue but returned within a week.

The underlying tissue damage or bacterial infection was not treated. Fungus is always secondary. Treat the primary wound with a broad-spectrum antibiotic such as kanamycin, maintain pristine water quality, and only then address the fungal overgrowth.

2 Fish developed red gills and gasping after methylene blue bath.

Methylene blue at high concentrations can damage gill tissue. Reduce the bath concentration to 1 mg per liter and limit exposure to 15 minutes. Increase aeration immediately and perform a water change if gasping persists.

3 Fungus appeared on multiple fish simultaneously after a cold snap.

Temperature drop below 18°C/64°F suppresses immune function and accelerates fungal growth. Raise temperature gradually to 22–24°C/72–75°F if species-appropriate, perform a large water change, and treat with methylene blue or acriflavine. Check for underlying bacterial infections that opened the tissue.

4 Hydrogen peroxide dip caused the fish to roll over and lose equilibrium.

The peroxide concentration was too high or the dip duration exceeded safe limits. Immediately return the fish to clean, well-aerated tank water. Never exceed 2 ml per liter for 5 minutes. Methylene blue baths are safer for most hobbyists.

Glossary of Terms
Saprolegnia
A genus of oomycete water molds commonly called true fungus; it colonizes dead or damaged tissue on fish, producing fluffy white or grey cotton-wool growths. Taxonomically placed in Kingdom Stramenopiles (Chromista), not Kingdom Fungi.
Oomycete
A group of fungus-like organisms in Kingdom Stramenopiles including Saprolegnia; they have cellulose cell walls, diploid nuclei, and produce motile biflagellate zoospores, making them more closely related to brown algae and diatoms than to true fungi.
Methylene blue
A thiazine dye with strong antifungal and mild antibacterial properties; used as a bath treatment for external oomycete infections and to improve oxygen transport in fish with gill damage.
Acriflavine
A topical antiseptic and antifungal agent used in aquarium products such as API Fungus Cure; effective against Saprolegnia and some bacterial biofilms.
Zoospore
The motile, biflagellated reproductive spore of oomycetes such as Saprolegnia; zoospores swim through water and attach to compromised tissue to initiate infection.
Scientific References
  1. Saprolegniasis in Freshwater Fish: Diagnosis and Treatment
  2. Oomycete Infections in Ornamental Aquarium Fish
  3. Methylene Blue and Acriflavine Protocols for External Oomycete Infections
  4. Environmental Factors Influencing Saprolegnia Outbreaks in Aquaculture

Frequently Asked Questions

What does true fungus look like?
It appears as white or grey fluffy, cotton-like tufts on the fish's body, fins, or eggs. It resembles wet cotton wool and will not be a uniform, flat patch.
How is fungus different from Columnaris?
Columnaris (bacterial) is often smoother, greyish-white, and may appear as a saddle across the back or a patch on the mouth. Fungus is more three-dimensional and fluffy. Columnaris progresses faster and is more lethal.
Can fungus grow on healthy tissue?
No. Saprolegnia requires dead or damaged tissue to colonise. A fungal infection on a fish is always secondary to an injury, bacterial lesion, or poor water quality.
Why is methylene blue used?
Methylene blue is a strong antifungal and mild antibacterial. It also helps improve oxygen transport in fish with gill damage. As a bath, it directly treats external fungus without affecting the main tank's filter.
Is fungus contagious?
The fungal spores are present in most aquariums, but they only infect tissue that is already compromised. Healthy fish are not at risk. There is no need to quarantine unless other pathogens are present.
Can I use hydrogen peroxide for fungus?
Yes, a 3% hydrogen peroxide dip (1–2 ml per litre for 5–10 minutes) can be effective against external fungus on fish and eggs. However, it is risky and must be done with extreme caution. Methylene blue is safer.
How do I prevent fungus on eggs?
Use a methylene blue bath at 1–2 drops per gallon. Remove unfertilised (white) eggs promptly, as they are the prime target. Increase gentle aeration to prevent stagnant spots.
Does fungus need light to grow?
Saprolegnia does not require light and can grow in complete darkness. Reducing light will not stop a fungal infection, unlike velvet.
Can salt cure fungus?
Salt may inhibit some fungal growth and help the fish heal, but it is not a reliable antifungal. Dedicated antifungal medications are far more effective.
Will fungus clear on its own after a water change?
Improving water quality can cause fungus to recede if the underlying cause (dead tissue) is removed. However, established fungal tufts usually require manual removal and medication.
Why does true fungus outbreak more often in cold water or after temperature drops?
Saprolegnia thrives in cooler water between 10–20°C/50–68°F, which is why pond fish and cold-water species like goldfish see more fungal outbreaks in autumn and winter. Temperature drops below 18°C/64°F slow fish metabolism and immune response while the oomycete continues to grow. In tropical tanks, fungal outbreaks usually follow bacterial infections such as fin rot or physical injuries from fighting, because the oomycete colonizes the dead tissue left behind. I see the highest caseloads in outdoor ponds during the first cold snap of autumn, when koi and goldfish immune systems are sluggish and any existing wound becomes a fungal target within 48 hours.
Does quarantining new fish prevent true fungus outbreaks in the main tank?
Quarantine has limited value for preventing Saprolegnia because the oomycete spores are already ubiquitous in virtually all freshwater systems. A proper 14-day quarantine is useful for detecting underlying bacterial infections or physical injuries that would become fungal targets, but the spores themselves cannot be excluded. The real prevention comes from maintaining pristine water quality, avoiding rough handling that causes scale loss, and treating any fin rot or bacterial wounds promptly before fungus colonizes the damaged tissue. If a new fish arrives with visible fungal tufts, quarantine allows you to treat the oomycete and the underlying cause without exposing the main tank to additional stressors.